Google Webmaster Tools has updated the "Search queries" and "Links to your site" features:
- Search queries with top pages: Now when you visit search queries feature in Webmaster Tools you'll see a new tab "Top Pages," that lists impression, click, and position data for the top pages on your site based on their performance in Google's search results.

If you click any of the individual pages listed you'll see a list of queries driving traffic to that page along with impressions and number of clicks for each query.

Just like in the "Top queries" view, you can click a specific query to see more detailed data and evaluate how the query is performing across the whole site.

To make filtering in search queries even easier, pie charts are added to show visually the proportions of search type, location and traffic. Also in "Top queries" view, you can now specify "containing" or "not containing" when filtering queries.

- Links to your site with intermediate links: Links to your site now shows when a particular URL redirects. If there's a link to your site that links to URL1 which then redirects to URL2, -- now showing the link from URL1 to URL2 as an intermediate link. Also added a "Download all links" option to all the tables in the links to your site feature.

[Source]

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